Hi Man,
I don't see any problem using the BPT ECU with an FE-DOHC.
You just have to make sure that the ECU thinks it is a BPT it is controlling.
Every BPT sensors, injectors ... must be adapted to be a perfect fit on the FE-DOHC. One difficulty I se would be the distributor as I have never really seen a BPT distributor (On the F2T to FE-DOHC swap this was the part I had to modify by extending the shaft). I wish I would have documented the swap more carefuly.
Any way if you choose to go this route and need support, let me know. I can give you some support.
Regarding the F2T ECU, it would cost you a lot to get everything since you would then need the ECU, the wiring, the sensors, the VAF, the distributor ...
If you are lucky and somebody is parting a GT you could have all these parts together for a good price (Provided the seller is a true sixer and would rather help than charge you with big money)
Also, depending on your budget, I could always get you all the stuff from a Probe GT here in Germany.
Peace
NSXR